Peng, Y.-C., Levine, C.M., Zahid, S., Wilson, E.L., Joyner, A.L. (2013) Sonic hedgehog signals to multiple prostate stromal stem cells that replenish distinct stromal subtypes during regeneration. PNAS, 110:20611-20616.

Petrova, R., Garcia, A.D.R., Joyner, A.L. (2013) Titration of GLI3 repressor activity by sonic hedgehog signaling is critical for maintaining multiple adult neural stem cell and astrocyte functions. J Neuroscience. Oct 30;33(44):17490-505.

Steadman, P.E., Ellegood, J., Szulc, K.U., Turnbull, D.H., Joyner, A.L., Henkelman, R.M., Lerch, J.P. (2013) Genetic effects on Cerebellar structure across mouse models of Autism using a magnetic resonance imaging atlas. Autism Research. 7(1):124-37.

Szulc, K.U., Nieman,B.J., Houston, E.J., Bartelle,B.B., Lerch, J.P., Joyner, A.L., Turnbull, D.H. (2013) MRI analysis of cerebellar and vestibular developmental phenotypes in Gbx2 conditional knockout mice. Magnetic Resonance in Medicine. 70(6):1707-17.

Sgadò, P., Genovesi, S., Kalinovsky, A., Zunino, G., Macchi, F., Allegra, M., Murenu, E., Provenzano, G., Tripathi, P.P., Casarosa, S., Joyner, A.L., Bozzi, Y. (2013) Loss of GABAergic neurons in the hippocampus and cerebral cortex of Engrailed-2 null mutant mice: Implications for autism spectrum disorders. Experimental Neurology. 247: 496-505.

Liu, L., Kugler, M.C., Loomis, C.A., Samdani, R., Zhao, Z., Chen, G.J., Brandt, J.P., Brownell, I., Joyner, A.L., Rom, W.N., Munger, J.S. (2013) Hedgehog signaling in neonatal and adult lung. Am J Respir Cell Mol Biol. 48:703-710.

Bowers, M., Eng, L., Lao, Z., Turnbull, R.K., Bao, X., Riedel, E., Mackem, S., Joyner, A.L. (2012) Limb anterior-posterior polarity integrates activator and repressor functions of GLI2 as well as GLI3. Developmental Biology, 370: 110-124.

Lao, Z., Raju, P., Bai, B and Joyner, A.L. (2012) MASTR: a technique for mosaic mutant analysis with spatial and temporal control of recombination using conditional floxed alleles in mice. Cell Reports, 2: 386-396.

Orvis, G.D., Hartzell, A.L., Smith, J.B., Barraza, L.H., Sandra L. Wilson, S.L., Szulc, K.U., Daniel H. Turnbull, D.H., and Joyner, A.L. (2012) The Engrailed homeobox genes are required in multiple cell lineages to coordinate sequential formation of fissures and growth of the cerebellum. Developmental Biology, 367: 25-39.

Sudarov, A., Turnbull, R.K., Kim, E.J., Lebel-Potter, M., Guillemot G., Joyner, A.L. (2011) Ascl1 genetics reveals insights into cerebellum local circuit assembly. J. Neuroscience, 31:11055-11069.

Blaess, S., Bodea, G.O., Kabanova, A., Chanet, S., Mugniery, E., Derouiche, A., Stephen, D., and Alexandra L. Joyner (2011) Temporal-spatial changes in Sonic Hedgehog expression and signaling reveal different potentials of ventral mesencephalic progenitors to populate distinct ventral midbrain nuclei. Neural Development, 6: 29.

Joyner, A.L., and Sudarov, A. (2011) Genetic Neuroanatomy. In: The mouse nervous system. Ed. Watson, C., Paxinos, G. and Puelles, L, Academic Press, Elsevier Ltd, London, England.

Wilson, S.L., Kalinovsky, A., Orvis, G.D., Joyner, A.L. (2011) Spatially restricted and developmentally dynamic expression of Engrailed genes in multiple cerebellar cell types. The Cerebellum, special issue “cerebellar compartmentalization”, 10: 3.

Brownell, I., Guevara, E., Loomis, C.A., Joyner, A.L. (2011) Nerve-derived Sonic hedgehog defines a niche for hair follicle stem cells capable of becoming epidermal skin stem cells. Cell Stem Cell. 8: 552-565.

Yu X., Nieman B.J., Sudarov A., Szulc K.U., Abdollahian D., Bhatia N., Lalwani A.K., Joyner, A.L., Turnbull, D.H. (2011) Morphological and functional midbrain phenotypes in Fibroblast growth factor 17 mutant mice detected by Mn-enhanced MRI. Neuroimage. 56: 1251-1258.

Seidel, K., Ahn, C.P., Lyons, D., Nee, A., Ting, K., Brownell, I., Cao, T., Carano, R.A.D., Curran, T., Schober, M., Fuchs, E., Joyner, A.L.,  Martin, G.R., de Sauvage, F.K., Klein, O.D. (2010) Hedgehog signaling regulates the generation of ameloblast progenitors in the continuously growing mouse incisor. Development, 137: 3753-3761.

Garcia, A.D.R., Petrova, R., Eng, L., Joyner, A.L. (2010) Sonic hedgehog regulates discrete populations of astrocytes in the adult mouse forebrain. J. Neuroscience, 30: 13597-13608.

Sillitoe, R.V., Vogel, M.W., Joyner, A.L. (2010) Engrailed homeobox genes regulate establishment of the cerebellar afferent circuit map. J. Neuroscience, 30: 10015-10024.

Legué, E., and Joyner, A.L. (2010) Genetic fate mapping using site-specific recombinases. Methods in Enzymology, 477: 153-181.

Nieman, B.J., Shyu, J.Y., Rodriguez, J.J., Garcia, A.D., Joyner, A.L., Turnbull, D.H. (2010). In vivo MRI of neural cell migration dynamics in the mouse brain. NeuroImage, 50: 456-465.

Cheng, Y., Sudarov, A., Szulc, K.U., Sgaier, S.K., Stephen, D., Turnbull, D.H., and Joyner, A.L. (2010) The Engrailed homeobox genes determine the different foliation patterns in the vermis and hemispheres of the mammalian cerebellum. Development, 137: 519-529.

Berrios-Otero C.A., Wadghiri Y.Z., Nieman B.J., Joyner, A.L., Turnbull D.H. (2009) Three-dimensional micro-MRI analysis of cerebral artery development in mouse embryos. Magn Reson Med. 26: 1431-1439.

Sato, T., and Joyner, A.L. (2009) Duration of Fgf8 isthmic organizer expression is key to patterning different tectal-isthmo-cerebellum structures. Development, 136: 3617-3626.

Sillitoe, R. V., Gopal, N. and Joyner, A.L. (2009) Embryonic origins of ZebrinII parasagittal stripes and establishment of topographic Purkinje cell projections. Neuroscience, special issue “New Insight in Cerebellar Function”, 162: 574-588.

Sillitoe, R. V., Stephen, D., Lao, Z. and Joyner, A.L. (2008) Engrailed homeobox genes determine the organization of Purkinje cell sagittal stripe gene expression in the adult cerebellum. J. Neuroscience, 28: 12150-2162.

Thomas, N.A., Koudils, M., van Eeden, F.J.M., Joyner, A.L., Yelon, D. (2008) Hedgehog signaling plays a cell autonomous role in maximizing cardiac developmental potential. Development, 135: 3789-3799.

Blaess, S., Stephen, D., and Joyner, A.L. (2008) Gli3 coordinates three-dimensional patterning and growth of the tectum and cerebellum by integrating Shh and Fgf8 signaling. Development, 135: 2093-2103.

Basson, M.A., Echevarria, D., Ahn, C.P., Sudarov, A., Joyner, A.L., Mason, I.J., Martinez, S., Martin, G.R. (2008) Specific regions within the embryonic midbrain and cerebellum require different levels of FGF signaling during development. Development, 135(5):889-98.

Sudarov, A. and Joyner, A.L. (2007) Cerebellum morphogenesis: the foliation pattern is orchestrated by multi-cellular anchoring centers. Neural Development, 2:26.

Fuccillo, M., Joyner, A.L. and Fishell, G. (2006) From morphogen to mitogen: the multiple roles of Hedgehog signaling in vertebrate neural development. Nature Reviews Neuroscience, 7:772-783.

Olsen, S. K., Li, J.Y.H., Bromleigh, C., Eliseenkova A.V., Ibrahimi O., Lao Z. , Zhang F., Linhardt R.J., Joyner A.L., and Mohammadi M. (2006) Structural basis by which alternative splicing modulates the organizer activity of FGF8 in the brain. Genes & Development, 20:185-198.

Blaess S, Stephen D, Joyner AL. (2008) Gli3 coordinates three-dimensional patterning and growth of the tectum and cerebellum by integrating Shh and Fgf8 signaling. Development. 2008 Jun;135(12):2093-103.

Blaess, S., Corrales, J.D. and Joyner, A.L. (2006) Sonic hedgehog regulates Gli activator and Gli3 repressor functions with spatial and temporal precision in the mid/hindbrain region. Development, 133: 1799-1809.

Corrales, J.D., Blaess, S., Mahoney, E.M. and Joyner, A.L. (2006) The level of Sonic Hedgehog signaling regulates the complexity of cerebellar foliation. Development, 133:1811-1821.

Zervas, M., Millet, S., Ahn, S. and Joyner, A.L. (2004) Cell behaviors and genetic lineages of the mesencephalon and rhombomere 1. Neuron, 43: 345-357.

Zaim Wadghiri Y, Blind J.A., Duan X., Moreno C., Yu X., Joyner A.L., Turnbull D.H. (2004). Mn-enhanced MRI of mouse brain development. NMR in Biomedicine, 17: 613-619.

Austin, C.P., Battey, J.F., Bradley, A., Bucan, M., Capecchi, M., Collins, F.S., Dove, W.F., Duyk, G., Dymecki , S., Eppig, J.T., Grieder, F.B., Heintz , N., Hicks, G., Insel, T.R., Joyner, A., Koller, B.H., Lloyd, K.C., Magnuson, T., Moore, M.W., Nagy, A., Pollock, J.D., Roses, A.D., Sands, A.T., Seed, B., Skarnes, W. (2004) The knockout mouse project. Nature Genetics, 36: 921-4.

Sillitoe, R.V. and Joyner, A.L. (2007) Morphology, molecular codes, and circuitry produce the three-dimensional complexity of the cerebellum. Annual Review of Cell and Developmental Biology, 23:549-77.

Ahn, S. and Joyner, A.L. (2005) Quiescent adult neural stem cells are targets of Sonic hedgehog signaling. Nature, 437: 894-897.

Atit, R., Sgaier, S. K., Mohamed, O. A., Dufort, M. T., D., Joyner, A. L., Niswander, L., and Conlon, R. A. (2006) ß-catenin activation is necessary and sufficient to specify the dermal fate. Developmental Biology, 296:164-76.

Joyner, A.L. and Zervas, M. (2006) Genetic fate mapping in mouse: establishing genetic lineages and defining genetic neuroanatomy in the nervous system. Developmental Dynamics, 235:2376-85.

Pan Y., Bai C.B., Joyner A.L., Wang B. (2006) Sonic hedgehog signaling regulates Gli2 transcriptional activity by suppressing its processing and degradation. Mol Cell Biol. 26:3365-3377.

Thomas, N., Koudijs, M., van Eeden F.J., Joyner, A.L., Yelon, D. (2008) Hedgehog signaling plays a cell-autonomous role in maximizing cardiac developmental potential. Development,22:3789-99.

Zervas M, Blaess S, Joyner, A.J., (2005) Classical embryological studies and modern genetic analysis of midbrain and cerebellum development. Curr. Topics Dev. Biol., 69: 103-138.

Kimura, H., Stephan, D., Joyner A.L. and Curran, T. (2005) Gli1 is important for medulloblastoma formation in Ptc1+/- mice. Oncogene, 24: 4026-4036.

Sgaier, S., Millet, S., Villanueva, M., Berenshteyn, F., Song, C. and Joyner, A. (2005) Morphogenetic and cellular movements that shape the mouse cerebellum: Insights from genetic fate mapping. Neuron, 45: 27-40.

Li, J.Y.H., Lao, Z., and Joyner, A.L. (2005) New regulatory interactions and cellular responses in the isthmic organizer region revealed by altering Gbx2 expression. Development, 132: 1971-1981.

Sgaier, S.K., Lao, Z., Villanueva, M.P., Berenshteyn, F., Stephen, D., Turnbull, R.K., Joyner, A.L. (2007) Genetic subdivision of the tectum and cerebellum into functionally related regions based on differential sensitivity to engrailed proteins. Development, 134(12):2325-35.

Briegel, K.J., Baldwin, H.S., Epstein, J.A. and Joyner, A.L. (2005) Congenital heart disease reminiscent of partial trisomy 2p syndrome in mice transgenic for the transcription factor Lbh. Development, 132: 3305-3316.

Ahn, S. and Joyner, A.L. (2004) Dynamic changes in the response of cells to positive Hedgehog-signaling during mouse limb patterning. Cell, 118:505-516.

Corrales, J.D., Rocco, G.L. and Joyner, A.L. (2004) Spatial restriction in Sonic Hedgehog signaling through Gli genes during cerebellum development. Development, 131: 5581-5590.

Sato, T., Joyner, A.L. and Nakamura, H. (2004) How does Fgf signaling from the isthmic organizer induce midbrain and cerebellum development? Develop. Growth Diff., 46: 487-494.

Bai, C.B., Stephen, D., and Joyner, A.L. (2004). All mouse ventral spinal cord patterning by Hedgehog is Gli dependent and involves an activator function of Gli3. Developmental Cell, 6: 103-115.