Amrita M. Nargund*, Mark W. Pellegrino*, Christopher J. Fiorese, Brooke M. Baker and Cole M. Haynes. 2012. Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation. Science. 337: 587-90.

Brooke M. Baker, Amrita M. Nargund, Tiffany Sun and Cole M. Haynes. 2012. Protective coupling of mitochondrial function and protein synthesis via the eIF2a kinase GCN-2. PLoS Genetics. 8: e1002760

Mark W. Pellegrino, Amrita M. Nargund and Cole M. Haynes. 2012. Signaling the mitochondrial unfolded protein response. Biochim Biophys Acta.

Brooke M. Baker and Cole M. Haynes. 2011. Mitochondrial protein quality control during biogenesis and aging. Trends in Biochemical Sciences. 36: 254-61.

Cole M. Haynes and David Ron. 2010. The mitochondrial UPR — protecting organelle protein homeostasis. The Journal of Cell Science. 123: 3849-55.

Cole M. Haynes, Yun Yang, Steven Blais, Thomas A. Neubert and David Ron. 2010. The matrix peptide exporter HAF-1 signals a mitochondrial UPR by activating the transcription factor ZC376.7 in C. elegans. Molecular Cell. 37(4): 529-40.

R. Luke Wiseman, Cole M. Haynes and David Ron. 2010. Snapshot: The Unfolded Protein Response. Cell. 140(4): 590.

Cole M. Haynes, Kseniya Petrova, Cristina Benedetti, Yun Yang and David Ron. 2007. ClpP mediates activation of a mitochondrial unfolded protein response in C. elegans. Developmental Cell. 13(4): 467-480.

R. Luke Wiseman, King-Tung Chin, Cole M. Haynes, Ariel Stanhill, Chong-Feng Xu, Assen Roguev, Nevan J. Krogan, Thomas A. Neubert, and David Ron. 2009.Thioredoxin related protein is an arsenite-regulated thiol reductase of the proteaseome 19S particle. The Journal of Biological Chemistry. 284: 15233-15245.

Yun C, Stanhill A, Yang Y, Haynes CM, Xu CF, Neubert TA, Mor A, Philips MR and Ron D. 2008. Proteasomal adaptation to environmental stress links resistance to proteotoxicity with longevity in Caenorhabditis elegans. PNAS. 105(19): 7094-9.

Stanhill A, Haynes CM, Zhang Y, Min G, Steele MC, Kalinina J, Martinez E, Pickart CM, Kong XP and Ron D. 2006. An arsenite-inducible 19S regulatory particle-associated protein adapts proteasomes to proteotoxicity. Molecular Cell. 23(6): 875-885.

Cristina Benedetti, Cole M. Haynes, Yun Yang, Heather P. Harding and David Ron. 2006. Ubiquitin-like protein 5 positively regulates chaperone gene expression in the mitochondrial unfolded protein response. Genetics. 174(1): 229-239.

Cooper AA, Gitler AD, Cashikar A, Haynes CM, Hill KJ, Bhullar B, Liu K, Xu K, Strathearn KE, Liu F, Cao S, Caldwell KA, Caldwell GA, Marsischky G, Kolodner RD, Labaer J, Rochet JC, Bonini NM and Lindquist S. 2006. Alpha-synuclein blocks ER-Golgi traffic and Rab1 rescues neuron loss in Parkinson's models. Science. 313(5785): 324-328.

Cole M. Haynes, Eric A. Titus and Antony A. Cooper. 2004. Degradation of misfolded proteins prevents ER-derived oxidative stress and cell death. Molecular Cell. 15(5): 767-76.

Cole M. Haynes, Sabrina Caldwell and Antony A. Cooper. 2002. An HRD/DER-independent ER quality control mechanism involves Rsp5p-dependent ubiquitination and ER-Golgi transport. The Journal of Cell Biology. 158(1): 91-101.