Ubeda, C, Bucci, V, Caballero, S, Djukovic, A, Toussaint, NC, Equinda, M, Lipuma, L, Ling, L, Gobourne, A, No, D, Taur, Y, Jenq, R, van den Brink, M, Xavier, J, and Pamer, E (2013). Intestinal microbiota containing Barnesiella cures vancomycin-resistant Enterococcus faecium colonization. Infect. Immun., doi: 10.1128/IAI.01197-12.
Malisi, C, Schumann, M, Toussaint, NC, Kageyama, J, Kohlbacher, O, and Höcker, B (2012). Binding pocket optimization by computational protein design. PLoS ONE 7(12): e52505.
Toussaint, NC, Maman, Y, Kohlbacher, O, and Louzoun, Y (2011). Universal peptide vaccines – optimal peptide vaccine based on viral sequence conservation. Vaccine, 29(47):8745-53.
Toussaint, NC, Feldhahn, M, Ziehm, M, Stevanović, S, and Kohlbacher, O (2011). T-Cell Epitope Prediction Based on Self-Tolerance. Proceedings of the 2nd Immunoinformatics and Computational Immunology Workshop (ICIW).
Canzar, S, Toussaint, NC, and Klau, GW (2011). An Exact Algorithm for Side-Chain Placement in Protein Design. Optimization Letters, 1-14.
Hildebrandt, A, Dehof, AK, Rurainski, A, Bertsch, A, Schumann, M, Toussaint, NC, Moll, A, Stockel, D, Nickels, S, Mueller, SC, Lenhof, H-P, and Kohlbacher, O (2010). BALL - Biochemical Algorithms Library 1.3. BMC Bioinformatics, 11:531.
Toussaint, NC, Widmer, C, Kohlbacher, O, and Rätsch, G (2010).
Exploiting Physico-Chemical Properties in String Kernels. BMC Bioinformatics, 11(Suppl 8):S7.
Widmer, C, Altun, Y, Toussaint, NC, and Rätsch, G (2010).
Inferring Latent Task Structure for Multi-Task Learning via Multiple Kernel Learning. BMC Bioinformatics, 11(Suppl 8):S5.
Widmer, C, Toussaint, NC, Altun, Y, Kohlbacher, O, and Rätsch, G (2010). Novel Machine Learning Methods for MHC Class I Binding Prediction. In: Pattern Recognition in Bioinformatics 5th IAPR International Conference, PRIB 2010, Nijmegen, The Netherlands, September 22-24, 2010. Proceedings, ed. by Tjeerd M.H. Dijkstra, Evgeni Tsivtsivadze, Elena Marchiori and Tom Heskes, vol. 6282, pp. 98-109, Springer. Lecture Notes in Computer Science.
Toussaint, NC and Kohlbacher, O (2009). OptiTope - A Web Server for the Selection of an Optimal Set of Peptides for Epitope-based Vaccines. Nucl. Acids Res., 37:W617-22.
Toussaint, NC and Kohlbacher, O (2009). Towards in silico design of epitope-based vaccines. Expert Opinion on Drug Discovery, 4(10):1047-1060.
Toussaint, NC, Dönnes, P, and Kohlbacher, O (2008). A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-based Vaccines. PLoS Comput. Biol., 4(12):e1000246.
