John Chodera, PhD

Entropy-enthalpy compensation: Role and ramifications for rational ligand design
John D. Chodera and David L. Mobley.
Annu. Rev. Biophys.42:121-142 (2013).
[ePrint] [DOI]

The ribosome modulates nascent protein folding
Christian Kaiser, Daniel H. Goldman,John D. Chodera, Ignacio Tinoco, Jr., and Carlos Bustamante.
Science 334:1723 (2011)
[DOI]

Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation
Jerome P. Nilmeier, Gavin E. Crooks, David D. L. Minh, and John D. Chodera
Proc. Natl. Acad. Sci. USA, 108:E1009 (2011)
[DOI] 

Free energy methods in drug discovery and design: Progress and challenges
John D. Chodera, David L. Mobley, Michael R. Shirts, Richard W. Dixon Kim M. Branson, and Vijay S. Pande. 
Curr. Opin. Struct. Biol., 21:150 (2011)
[DOI] 

Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics
John D. Chodera*, Nina Singhal*, William C. Swope, Vijay S. Pande, and Ken A. Dill. 
* These authors contributed equally to the work. 
J. Chem. Phys. 126(15):155101 (2007)
[DOI]