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Selected Publications


Sterilizing immunity in the lung relies on targeting fungal apoptosis-like programmed cell death.
Shlezinger N, Irmer H, Dhingra S, Beattie SR, Cramer RA, Braus GH, Sharon A, Hohl TM.
2017. Science. 357(6355):1037-41. 

Multicenter Clinical and Molecular Epidemiological Analysis of Bacteremia Due to Carbapenem-Resistant Enterobacteriaceae (CRE) in the CRE Epicenter of the United States.
Satlin MJ, Chen L, Patel G, Gomez-Simmonds A, Weston G, Kim AC, Seo SK, Rosenthal ME, Sperber SJ, Jenkins SG, Hamula CL, Uhlemann AC, Levi MH, Fries BC, Tang YW, Juretschko S, Rojtman AD, Hong T, Mathema B, Jacobs MR, Walsh TJ, Bonomo RA, Kreiswirth BN.
2017. Antimicrob Agents Chemother. 61(4):e02349-16. 

Feasibility and applicability of antimicrobial stewardship in immunocompromised patients.
Robilotti E, Holubar M, Seo SK, Deresinski S.
2017. Curr Opin Infect Dis. 30(4):346-53. 

Intestinal Microbiota and Relapse After Hematopoietic-Cell Transplantation.
Peled JU, Devlin SM, Staffas A, Lumish M, Khanin R, Littman ER, Ling L, Kosuri S, Maloy M, Slingerland JB, Ahr KF, Porosnicu Rodriguez KA, Shono Y, Slingerland AE, Docampo MD, Sung AD, Weber D, Alousi AM, Gyurkocza B, Ponce DM, Barker JN, Perales MA, Giralt SA, Taur Y, Pamer EG, Jenq RR, van den Brink MRM.
2017. J Clin Oncol. 35(15):1650-9.

Approach to adenovirus infections in the setting of hematopoietic cell transplantation.
Lee YG, Prockop SE, Papanicolaou GA.
2017. Curr Opin Infect Dis. 30(4):377-87.

Trends in invasive pneumococcal disease (IPD) in cancer patients after the introduction of 7-valent pneumococcal conjugate vaccine (PCV7): A 20-year longitudinal study at a major urban cancer center.
Lee YJ, Huang YT, Kim SJ, Kerpelev M, Gonzalez V, Kaltsas A, Papanicolaou G.
2017. Clin Infect Dis. 

Protective Factors in the Intestinal Microbiome Against Clostridium difficile Infection in Recipients of Allogeneic Hematopoietic Stem Cell Transplantation.
Lee YJ, Arguello ES, Jenq RR, Littman E, Kim GJ, Miller LC, Ling L, Figueroa C, Robilotti E, Perales MA, Barker JN, Giralt S, van den Brink MRM, Pamer EG, Taur Y.
2017. J Infect Dis. 215(7):1117-23. 

Cooperating Commensals Restore Colonization Resistance to Vancomycin-Resistant Enterococcus faecium.
Caballero S, Kim S, Carter RA, Leiner IM, Susac B, Miller L, Kim GJ, Ling L, Pamer EG.
2017. Cell Host Microbe. 21(5):592-602. 

Commensal microbes provide first line defense against Listeria monocytogenes infection.
Becattini S, Littman ER, Carter RA, Kim SG, Morjaria SM, Ling L, Gyaltshen Y, Fontana E, Taur Y, Leiner IM, Pamer EG.
2017. J Exp Med. 214(7):1973-89. 

Management of Latent Tuberculosis Infection Among Healthcare Workers: 10-Year Experience at a Single Center.
Arguello Perez E, Seo SK, Schneider WJ, Eisenstein C, Brown AE.
2017. Clin Infect Dis. 65(12):2105-2111. 


Innate Lymphocyte/Ly6C(hi) Monocyte Crosstalk Promotes Klebsiella Pneumoniae Clearance.
Xiong H, Keith JW, Samilo DW, Carter RA, Leiner IM, Pamer EG.
2016. Cell. 165(3):679-89. 

Increased GVHD-related mortality with broad-spectrum antibiotic use after allogeneic hematopoietic stem cell transplantation in human patients and mice.
Shono Y, Docampo MD, Peled JU, Perobelli SM, Velardi E, Tsai JJ, Slingerland AE, Smith OM, Young LF, Gupta J, Lieberman SR, Jay HV, Ahr KF, Porosnicu Rodriguez KA, Xu K, Calafiore M, Poeck H, Caballero S, Devlin SM, Rapaport F, Dudakov JA, Hanash AM, Gyurkocza B, Murphy GF, Gomes C, Liu C, Moss EL, Falconer SB, Bhatt AS, Taur Y, Pamer EG, van den Brink MRM, Jenq RR.
2016. Sci Transl Med. 8(339):339ra71. 

The Immunocompromised Traveler.
Shah MK.
2016. Oncology (Williston Park). 30(2):142,145-6.

Current State of Antimicrobial Stewardship at Solid Organ and Hematopoietic Cell Transplant Centers in the United States.
Seo SK, Lo K, Abbo LM.
2016. Infect Control Hosp Epidemiol. 37(10):1195-200.

Bile acid sensitivity and in vivo virulence of clinical Clostridium difficile isolates.
Lewis BB, Carter RA, Pamer EG.
2016. Anaerobe. 41:32-36. 

Adenovirus Viremia in Adult CD34(+) Selected Hematopoietic Cell Transplant Recipients: Low Incidence and High Clinical Impact.
Lee YJ, Huang YT, Kim SJ, Maloy M, Tamari R, Giralt SA, Papadopoulos EB, Jakubowski AA, Papanicolaou GA.
2016. Biol Blood Marrow Transplant. 22(1):174-8. 

Role of Granulocyte-Macrophage Colony-Stimulating Factor Signaling in Regulating Neutrophil Antifungal Activity and the Oxidative Burst During Respiratory Fungal Challenge.
Kasahara S, Jhingran A, Dhingra S, Salem A, Cramer RA, Hohl TM.
2016. J Infect Dis. 213(8):1289-98. 

Transmission of Clostridium difficile During Hospitalization for Allogeneic Stem Cell Transplant.
Kamboj M, Sheahan A, Sun J, Taur Y, Robilotti E, Babady E, Papanicolaou G, Jakubowski A, Pamer E, Sepkowitz K.
2016. Infect Control Hosp Epidemiol. 37(1):8-15.

DAP12 Inhibits Pulmonary Immune Responses to Cryptococcus neoformans.
Heung LJ, Hohl TM.
2016. Infect Immun. 84(6):1879-86. 

Gut Microbiota Predict Pulmonary Infiltrates after Allogeneic Hematopoietic Cell Transplantation.
Harris B, Morjaria SM, Littman ER, Geyer AI, Stover DE, Barker JN, Giralt SA, Taur Y, Pamer EG.
2016. Am J Respir Crit Care Med. 194(4):450-63.

Intestinal microbiome analyses identify melanoma patients at risk for checkpoint-blockade-induced colitis.
Dubin K, Callahan MK, Ren B, Khanin R, Viale A, Ling L, No D, Gobourne A, Littman E, Huttenhower C, Pamer EG, Wolchok JD.
2016. Nat Commun. 7:10391.

The Spectrum of Serious Infections Among Patients Receiving Immune Checkpoint Blockade for the Treatment of Melanoma.
Del Castillo M, Romero FA, Arguello E, Kyi C, Postow MA, Redelman-Sidi G.
2016. Clin Infect Dis. 63(11):1490-3.

Atypical presentation of Legionella pneumonia among patients with underlying cancer: A fifteen-year review.
Del Castillo M, Lucca A, Plodkowski A, Huang YT, Kaplan J, Gilhuley K, Babady NE, Seo SK, Kamboj M.
2016. J Infect. 72(1)45-51.

TLR-7 activation enhances IL-22-mediated colonization resistance against vancomycin-resistant enterococcus.
Abt MC, Buffie CG, Susac B, Becattini S, Carter RA, Leiner I, Keith JW, Artis D, Osborne LC, Pamer EG.
2016. Sci Transl Med. 8(327):327ra25.


Distinct Contributions of Neutrophils and CCR2+ Monocytes to Pulmonary Clearance of Different Klebsiella pneumoniae Strains.
Xiong H, Carter RA, Leiner IM, Tang YW, Chen L, Kreiswirth BN, Pamer EG.
2015. Infect Immun. 83(9):3418-27.

Loss of Microbiota-Mediated Colonization Resistance to Clostridium difficile Infection With Oral Vancomycin Compared With Metronidazole.
Lewis BB, Buffie CG, Carter RA, Leiner I, Toussaint NC, Miller LC, Gobourne A, Ling L, Pamer EG.
2015. J Infect Dis. 212(10):1656-65. 

Use of Disinfection Cap to Reduce Central-Line-Associated Bloodstream Infection and Blood Culture Contamination Among Hematology-Oncology Patients.
Kamboj M, Blair R, Bell N, Son C, Huang YT, Dowling M, Lipitz-Snyderman A, Eagan J, Sepkowitz K.
2015. Infect Control Hosp Epidemiol. 36(12):1401-8.

Clinical and radiographic differentiation of lung nodules caused by mycobacteria and lung cancer: a case-control study.
Figueroa CJ, Riedel E, Glickman MS.
2015. BMC Infect Dis. 15:482.

Integration of whole-genome sequencing into infection control practices: the potential and the hurdles.
Robilotti E, Kamboj M.
2015. J Clin Microbiol. 53(4):1054-5.

Monitoring of cytomegalovirus viral loads by two molecular assays in whole-blood and plasma samples from hematopoietic stem cell transplant recipients.
Babady NE, Cheng C, Cumberbatch E, Stiles J, Papanicolaou G, Tang YW.
2015. J Clin Microbiol. 53(4):1252-7.

Microbiota-mediated inflammation and antimicrobial defense in the intestine.
Caballero S, Pamer EG.
2015. Annu Rev Immunol. 33:227-56.

Brincidofovir for polyomavirus-associated nephropathy after allogeneic hematopoietic stem cell transplantation.
Papanicolaou GA, Lee YG, Young JW, Seshan SV, Boruchov AM, Chittick G, Momméja-Marin H, Glezerman IG.
2015. Am J Kidney Dis. 65(5):780-4.

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.
Buffie CG, Bucci V, Stein RR, McKenney PT, Ling L, Gobourne A, No D, Liu H, Kinnebrew M, Viale A, Littmann E, van den Brink MR, Jenq RR, Taur Y, Sander C, Cross JR, Toussaint NC, Xavier JB, Pamer EG.
2015. Nature. 517(7533):205-8.

Distinct but Spatially Overlapping Intestinal Niches for Vancomycin-Resistant Enterococcus faecium and Carbapenem-Resistant Klebsiella pneumoniae.
Caballero S, Carter R, Ke X, Susac B, Leiner IM, Kim GJ, Miller L, Ling L, Manova K, Pamer EG.
2015. PLoS Pathog. 11(9):e1005132. 

Compartment-specific and sequential role of MyD88 and CARD9 in chemokine induction and innate defense during respiratory fungal infection.
Jhingran A, Kasahara S, Shepardson KM, Junecko BA, Heung LJ, Kumasaka DK, Knoblaugh SE, Lin X, Kazmierczak BI, Reinhart TA, Cramer RA, Hohl TM.
2015. PLoS Pathog. 11(1):e1004589.3


Novel imidazoline antimicrobial scaffold that inhibits DNA replication with activity against mycobacteria and drug resistant Gram-positive cocci.
Harris KK, Fay A, Yan HG, Kunwar P, Socci ND, Pottabathini N, Juventhala RR, Djaballah H, Glickman MS.
2014. ACS Chem Biol. 9(11):2572-83.

Clostridium difficile infection after allogeneic hematopoietic stem cell transplant: strain diversity and outcomes associated with NAP1/027.
Kamboj M, Xiao K, Kaltsas A, Huang YT, Sun J, Chung D, Wu S, Sheahan A, Sepkowitz K, Jakubowski AA, Papanicolaou G.
2014. Biol Blood Marrow Transplant. 20(10):1626-33.

DNA ligase C1 mediates the LigD-independent nonhomologous end-joining pathway of Mycobacterium smegmatis.
Bhattarai H, Gupta R, Glickman MS.
2014. 196(19):3366-76.

Impact of peri-transplant vancomycin and fluoroquinolone administration on rates of bacteremia in allogeneic hematopoietic stem cell transplant (HSCT) recipients: a 12-year single institution study.
Seo SK, Xiao K, Huang YT, Jongwutiwes U, Chung D, Maloy M, Giralt S, Barker JN, Jakubowski AA, Papanicolaou GA.
2014. J Infect. 69(4):341-351.

The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation.Taur Y, Jenq RR, Perales MA, Littmann ER, Morjaria S, Ling L, No D, Gobourne A, Viale A, Dahi PB, Ponce DM, Barker JN, Giralt S, van den Brink M, Pamer EG.
2014. Blood. 124(7):1174-82.

Relationship of BK polyoma virus (BKV) in the urine with hemorrhagic cystitis and renal function in recipients of T Cell-depleted peripheral blood and cord blood stem cell transplantations.
Lee YJ, Zheng J, Kolitsopoulos Y, Chung D, Amigues I, Son T, Choo K, Hester J, Giralt SA, Glezerman IG, Jakubowski AA, Papanicolaou GA.
2014. Biol Blood Marrow Transplant. 20(8):1204-10.

The Rip1 protease of Mycobacterium tuberculosis controls the SigD regulon.
Schneider JS, Sklar JG, Glickman MS.
2014. 196(14):2638-45.

An essential nonredundant role for mycobacterial DnaK in native protein folding.
Fay A, Glickman MS.
2014. PLoS Genet. 10(7):e1004516.

Independent contribution of bronchoalveolar lavage and serum galactomannan in the diagnosis of invasive pulmonary aspergillosis.
Fisher CE, Stevens AM, Leisenring W, Pergam SA, Boeckh M, Hohl TM.
2014. Transpl Infect Dis. 16(3):505-10.

Real-time cellular analysis coupled with a specimen enrichment accurately detects and quantifies Clostridium difficile toxins in stool.
Huang B, Jin D, Zhang J, Sun JY, Wang X, Stiles J, Xu X, Kamboj M, Babady NE, Tang YW.
2014. J Clin Microbiol. 52(4):1105-11.

The mechanism of action of BCG therapy for bladder cancer—a current perspective.
Redelman-Sidi G, Glickman MS, Bochner BH.
2014. Nat Rev Urol. 11(3):153-62.

What is the source of bloodstream infection due to vancomycin-resistant enterococci in persons with mucosal barrier injury?
Kamboj M, Blair R, Bell N, Sun J, Eagan J, Sepkowitz K.
2014. Infect Control Hosp Epidemiol. 35(1):99-101.

Disseminated adenovirus infection in cancer patients presenting with focal pulmonary consolidation.
Lee YJ, Palomino-Guilen P, Babady NE, Lamson DM, St George K, Tang YW, Papanicolaou GA.
2014. J Clin Microbiol. 52(1):350-3.

Early Clostridium difficile infection during allogeneic hematopoietic stem cell transplantation.
Kinnebrew MA, Lee YJ, Jenq RR, Lipuma L, Littmann ER, Gobourne A, No D, van den Brink M, Pamer EG, Taur Y.
2014. PLoS One. 9(3):e90158.

Estimating risk of C. difficile transmission from PCR positive but cytotoxin negative cases.
Kamboj M, Babady NE, Marsh JW, Schlackman JL, Son C, Sun J, Eagan J, Tang YW, Sepkowitz K.
2014. PLoS One. 9(2):e88262.


Adenovirus viremia and disease: comparison of T cell-depleted and conventional hematopoietic stem cell transplantation recipients from a single institution.
Lee YJ, Chung D, Xiao K, Papadopoulos EB, Barker JN, Small TN, Giralt SA, Zheng J, Jakubowski AA, Papanicolaou GA.
2013. Biol Blood Marrow Transplant. 19(3):387-92.

Intestinal microbiota containing Barnesiella species cures vancomycin-resistant Enterococcus faecium colonization.
Ubeda C, Bucci V, Caballero S, Djukovic A, Toussaint NC, Equinda M, Lipuma L, Ling L, Gobourne A, No D, Taur Y, Jenq RR, van den Brink MR, Xavier JB, Pamer EG.
2013. Infect Immun. 81(3):965-73.

International travel patterns and travel risks of patients diagnosed with cancer.
Mikati T, Taur Y, Seo SK, Shah MK.
2013. J Travel Med. 20(2):71-7.

Quantitative assessment of T cell repertoire recovery after hematopoietic stem cell transplantation.
MR, Perales MA, Pamer EG.
2013. Nat Med. 19(3):372-7.

Oncogenic activation of Pak1-dependent pathway of macropinocytosis determines BCG entry into bladder cancer cells.
Redelman-Sidi G, Iyer G, Solit DB, Glickman MS.
2013. Cancer Res. 73(3):1156-67.


Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation.
Taur Y, Xavier JB, Lipuma L, Ubeda C, Goldberg J, Gobourne A, Lee YJ, Dubin KA, Socci ND, Viale A, Perales MA, Jenq RR, van den Brink MR, Pamer EG.
2012. Clin Infect Dis. 55(7):905-14.