The Zhirong Bao Lab: Publications

Visit PubMed for a full listing of Zhirong Bao’s journal articles

Pubmed is an online index of biomedical articles maintained by the U.S. National Library of Medicine and the National Institutes of Health.

Santella, A., Du, Z., Nowotschin, S., Hadjantonakis, A.-K. & Bao, Z. (2010). A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D. BMC Bioinformatics, 11, 580.

Pohl, C. & Bao, Z. (2010). Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis. Dev Cell, 19, 402-12.

Keller, P.J., Schmidt, A.D., Santella, A., Khairy, K., Bao, Z., Wittbrodt, J.& Stelzer, E.H.K. (2010). Fast high-contrast imaging of animal development with scanned light sheet-based structured illumination microscopy. Nat Methods, 7, 637-42.

Bao, Z., Murray, J.I., Boyle, T., Ooi, S.-L., Sandel, M.J. & Waterston R.H. Automated cell lineage tracing in Caenorhabditis elegans, PNAS, 103, 2707-12, 2006.

Bao, Z. & Murray, J.I. (2010). Live imaging of Caenorhabditis elegans embryogenesis, in Imaging in Developmental Biology: A Laboratory Manual, eds Sharpe J. & Wong R., Chapter 1, Cold Spring Harbor Laboratory Press, New York.

Murray, J.I. & Bao, Z. (2010). Automated lineage and expression profiling in live Caenorhabditis elegans embryos, in Imaging in Developmental Biology: A Laboratory Manual, eds Sharpe, J. & Wong, R., Chapter 56, Cold Spring Harbor Laboratory Press, New York.

Murray, J.I., Bao, Z., Boyle, T.J., Boeck, M.E., Mericle, B.L., Nicholas, T.J., Zhao, Z., Sandel, M.J. & Waterston R.H. (2008). Automated analysis of embryonic gene expression with cellular resolution in C. elegans, Nat Methods, 5, 703-9.

Bao, Z., Zhao, Z., Boyle, T.J., Murray, J.I. & Waterston R.H. (2008). Control of cell cycle timing during Caenorhabditis elegans embryogenesis, Dev Biol, 318, 65-72.

Jiang, N.*, Bao, Z.*, Zhang, X., Eddy, S.R., McCouch, S.R., Hirochika, H. & Wessler S.R. An active DNA transposon family in rice. Nature, 421, 163-7, 2003. (* co-first authors)

Stein, L.D., Bao, Z. et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biology, 1, 166-92, 2003.

Jiang, N.*, Bao, Z.*, Zhang, X., Eddy, S.R. & Wessler S.R. Pack-MULE transposable elements mediate gene evolution in plants. Nature, 431, 569-72, 2004. (* co-first authors)

Bao, Z. & Eddy S.R. Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res, 12, 1269-76, 2002.