Dissecting forces in tumor evolution using zebrafish models

The laboratory currently has multiple projects that aim to understand how heterogeneity is generated in the tumor cell population, and how the tumor microenvironment influences those heterogeneous populations. Some specific areas of focus include:

Tumor cell plasticity

Melanoma is amongst the most plastic of tumors, with each individual cell capable of existing on a spectrum between highly undifferentiated to deeply pigmented and differentiated. Using our zebrafish models, we discovered that success at metastatic sites is associated with a “phenotype switch” in which the microenvironment produces factors which promote this plasticity. These plasticity factors include molecules such as the endothelin EDN3b, which normally acts to promote melanocyte specification during embryonic development. Using CRISPRs, we found that deletion of EDN3b from the microenvironment strongly inhibits tumor progression and growth, identifying this as a relevant target in halting metastatic progression. These data imply that cellular identity of melanoma is not fixed, but instead is strongly dominated by the surrounding microenvironment in which the cell finds itself.

Lineage-identity programs in melanoma

Building upon this work, we are interested in identifying novel factors that control cell identity in melanoma. These include embryonic lineage programs that are important in normal melanocyte specification, and whether such embryonic programs are subverted for melanoma initiation, progression and metastasis. In some cases, these embryonic lineage programs are controlled cell-autonomously, and in other cases they are strongly influenced by the surrounding microenvironment. The mechanisms by which these embryonic lineage programs are maintained in melanoma, or not, is a significant open question for us.

Novel microenvironmental cell types in melanoma progression

We have identified new and unexpected cell types in the microenvironment which promote melanoma progression. These include adipocytes, or fat cells, as mediators of melanoma growth and invasion. We are using both focused and unbiased screening approaches to identify the factors present in these fat cells which promote these behaviors in the tumor cell itself. We also find that there are reciprocal interactions between the melanoma cells and the adipocytes, such that the tumor microenvironment itself is not a fixed entity, but highly influenced by the presence of nascent tumor cells.

New mechanisms of genetic evolution

Despite the absence of ultraviolet light exposure, our zebrafish melanomas exhibit a surprisingly high degree of genetic diversity. The origins and consequences of this diversity are unclear, and we are undertaking projects to identify how cell stress may alter mutational patterns in melanoma. The identification of such mechanisms will shed light on strategies that tumors may use to survive in new microenvironments. Some of these mechanisms may be amenable to pharmacologic inhibition.