Monaco H, Liu KS, Sereno T, Deforet M, Taylor BP, Chen Y, Reagor CC, Xavier
JB. Spatial-temporal dynamics of a microbial cooperative behavior resistant to
cheating. Nat Commun. 2022 Feb 7;13(1):721. doi: 10.1038/s41467-022-28321-9.
PMID: 35132084; PMCID: PMC8821651.

Campbell NR, Rao A, Hunter MV, Sznurkowska MK, Briker L, Zhang M, Baron M,
Heilmann S, Deforet M, Kenny C, Ferretti LP, Huang TH, Perlee S, Garg M,
Nsengimana J, Saini M, Montal E, Tagore M, Newton-Bishop J, Middleton MR, Corrie
P, Adams DJ, Rabbie R, Aceto N, Levesque MP, Cornell RA, Yanai I, Xavier JB,
White RM. Cooperation between melanoma cell states promotes metastasis through
heterotypic cluster formation. Dev Cell. 2021 Oct 25;56(20):2808-2825.e10. doi:
10.1016/j.devcel.2021.08.018. Epub 2021 Sep 15. PMID: 34529939; PMCID:
PMC8551056.

Schluter J, Peled JU, Taylor BP, Markey KA, Smith M, Taur Y, Niehus R, Staffas A, Dai A, Fontana E, Amoretti LA, Wright RJ, Morjaria S, Fenelus M, Pessin MS, Chao NJ, Lew M, Bohannon L, Bush A, Sung AD, Hohl TM, Perales MA, van den Brink MRM, Xavier JB. The gut microbiota is associated with immune cell dynamics in humans. Nature. 2020 Dec;588(7837):303-307. doi: 10.1038/s41586-020-2971-8. Epub 2020 Nov 25. PMCID: PMC7725892.

Carmona-Fontaine C, Deforet M, Akkari L, Thompson CB, Joyce JA, Xavier JB. Metabolic origins of spatial organization in the tumor microenvironment. Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2934-2939. doi: 10.1073/pnas.1700600114. Epub 2017 Feb 28. PMCID: PMC5358370.

Taur Y, Coyte K, Schluter J, Robilotti E, Figueroa C, Gjonbalaj M, Littmann ER, Ling L, Miller L, Gyaltshen Y, Fontana E, Morjaria S, Gyurkocza B, Perales MA, Castro-Malaspina H, Tamari R, Ponce D, Koehne G, Barker J, Jakubowski A, Papadopoulos E, Dahi P, Sauter C, Shaffer B, Young JW, Peled J, Meagher RC, Jenq RR, van den Brink MRM, Giralt SA, Pamer EG, Xavier JB. Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant. Sci Transl Med. 2018 Sep 26;10(460). pii: eaap9489. doi:10.1126/scitranslmed.aap9489.

Yan J, Deforet M, Boyle KE, Rahman R, Liang R, Okegbe C, Dietrich LEP, Qiu W, Xavier JB. Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network. PLoS Comput Biol. 2017 Aug 2;13(8):e1005677. doi: 10.1371/journal.pcbi.1005677. Epub 2017 Aug.

Boyle KE, Monaco HT, Deforet M, Yan J, Wang Z, Rhee K, Xavier JB. Metabolism and the Evolution of Social Behavior. Molecular biology and evolution. 2017;34(9):2367-79. Epub 2017/06/09. doi: 10.1093/molbev/msx174.

Reviews

Mathur D, Barnett E, Scher HI, Xavier JB. Optimizing the future: how
mathematical models inform treatment schedules for cancer. Trends Cancer. 2022
Mar 8:S2405-8033(22)00041-3. doi: 10.1016/j.trecan.2022.02.005. Epub ahead of
print. PMID: 35277375.

Xavier JB, Young VB, Skufca J, Ginty F, Testerman T, Pearson AT, Macklin P, Mitchell A, Shmulevich I, Xie L, Caporaso JG, Crandall KA, Simone NL, Godoy-Vitorino F, Griffin TJ, Whiteson KL, Gustafson HH, Slade DJ, Schmidt TM, Walther-Antonio MRS, Korem T, Webb-Robertson BM, Styczynski MP, Johnson WE, Jobin C, Ridlon JM, Koh AY, Yu M, Kelly L, Wargo JA. The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View. Trends Cancer. 2020 Mar;6(3):192-204. doi: 10.1016/j.trecan.2020.01.004. Epub 2020 Feb 7. PMCID: PMC7098063.

Yan J, Monaco H, Xavier JB. The Ultimate Guide to Bacterial Swarming: An Experimental Model to Study the Evolution of Cooperative Behavior. Annu Rev Microbiol. 2019 Sep 8;73:293-312. doi: 10.1146/annurev-micro-020518-120033. Epub 2019 Jun 10. PMCID: PMC7428860.