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The Dana Pe'er Lab: Publications


David van Dijk, Juozas Nainys, Roshan Sharma, Pooja Kathail, Ambrose J Carr, Kevin R Moon, Linas Mazutis, Guy Wolf, Smita Krishnaswamy, Dana Pe’er. MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data. 

DiGiuseppe JA, Cardinali JL, Rezuke WN, Pe’er D. PhenoGraph and viSNE facilitate the identification of abnormal T-cell populations in routine clinical flow cytometric data. Cytometry B Clin Cytom. 2017 Sep 2

Setty M, Tadmor MD, Reich-Zeliger S, Angel O, Salame TM, Kathail P, Choi K, Bendall S, Friedman N, Pe’er D Wishbone identifies bifurcating developmental trajectories from single-cell data Nat. Biotech. 2016 April 12

DiGiuseppe JA, Tadmor MD, Pe’er D . Detection of Minimal Residual Disease in B Lymphoblastic Leukemia Using viSNE. Cytometry B Clin Cytom. 2015 May 14 

Litvin O, Schwartz S, Wan Z, Schild T, Rocco M, Oh NL, Chen BJ, Goddard N, Pratilas C, Pe’er D . Interferon α/β enhances the cytotoxic response of MEK inhibition in Melanoma. Molecular Cell 2015 February 12 

Sanchez-Garcia F, Villagrasa P, Matsui J, Kotliar D, Castro V, Akavia UD, Chen BJ, Saucedo-Cuevas L, Barrueco RR, Llobet-Navas D, Silva JM, Pe’er D . Integration of Genomic Data Enables Selective Discovery of Breast Cancer Drivers Cell 2014 December 4 

Bendall SC, Davis KL, Amir EA, Tadmor MD, Simonds EF, Chen TJ, Shenfeld DK, Nolan GP, Pe’er D. Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development.Cell 2014 April 24 

El-ad David Amir, Erin Simonds, Michelle Tadmor, Kara Davis, Jacob Levine, Sean Bendall, Daniel Shenfeld, Smita Krishnaswamy, Garry Nolan and Dana Pe’er. “viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia”. Nat Biotechnol. 2013 Jun;31(6):545-52. Epub 2013 May 19.PMCID: PMC4076922

Carr A, Pe’er D. Broadening horizons: holistic viewpoints from the Biology of Genomes. Genome Biol. 2014 Jul 25