Large International Study Pinpoints Impact of TP53 Gene Mutations on Blood Cancer Severity

MSK molecular geneticist Elli Papaemmanouil

MSK molecular geneticist Elli Papaemmanouil

Considered the “guardian of the genome,” TP53 is the most commonly mutated gene in cancer. TP53’s normal function is to detect DNA damage and prevent cells from passing this damage on to daughter cells. When TP53 is mutated, the protein made from this gene, called p53, can no longer perform this protective function, and the result can be cancer. Across many cancer types, mutations in TP53 are associated with worse outcomes, like disease recurrence and shorter survival.

As with all our genes, TP53 exists in duplicate in our cells. One copy we get from our mothers, the other we get from our fathers. Up until now, it has not been clear whether a mutation was needed in one or both copies of TP53 to affect cancer outcomes. A new study led by researchers at Memorial Sloan Kettering definitively answers this question for a blood cancer called myelodysplastic syndrome (MDS), a precursor to acute myeloid leukemia.

“Our study is the first to assess the impact of having one versus two dysfunctional copies of TP53 on cancer outcomes,” says molecular geneticist Elli Papaemmanouil, a member of MSK’s Epidemiology and Biostatistics Department and the lead scientist on the study, published August 3 in the journal Nature Medicine. “From our results, it’s clear that you need to lose function of both copies to see evidence of genome instability and a high-risk clinical phenotype in MDS.”

The consequences for cancer diagnosis and treatment are immediate and profound, she says.

The Elli Papaemmanouil Lab
Molecular geneticist Elli Papaemmanouil performs systematic interrogations of well-annotated clinical trial cohorts in leukemia and cancer to explore how the compound genetic and clonal architecture in patients' leukemias and tumors dictate clinical phenotype, disease progression, and clinical outcomes.

A Large, Definitive Study

The study analyzed genetic and clinical data from 4,444 patients with MDS who were being treated at hospitals all over the world. Researchers from 25 centers in 12 countries were involved in the study, which was conducted under the aegis of the International Working Group for the Prognosis of MDS whose goal is to develop new international guidelines for the treatment of this disease. The findings were independently validated using data from the Japanese MDS working group led by Seishi Ogawa’s team in Kyoto University.

“Currently, the existing MDS guidelines do not consider genomic data such as TP53 and other acquired mutations when assessing a person’s prognosis or determining appropriate treatment for this disease,” says Peter Greenberg, Director of Stanford University’s MDS Center, Chair of the National Comprehensive Cancer Network Practice Guidelines Panel for MDS, and a co-author on the study. “That needs to change.”

Using new computational methods, the investigators found that about one-third of MDS patients had only one mutated copy of TP53. These patients had similar outcomes as patients who did not have a TP53 mutation — a good response to treatment, low rates of disease progression, and better survival rates. On the other hand, the two-thirds of patients who had two mutated copies of TP53 had much worse outcomes, including treatment-resistant disease, rapid disease progression, and low overall survival. In fact, the researchers found that TP53 mutation status — zero, one, or two mutated copies of the gene — was the most important variable when predicting outcomes.

Our findings are of immediate clinical relevance to MDS patients. Going forward, all MDS patients should have their TP53 status assessed at diagnosis.
Elli Papaemmanouil molecular geneticist

“Our findings are of immediate clinical relevance to MDS patients,” Dr. Papaemmanouil says. “Going forward, all MDS patients should have their TP53 status assessed at diagnosis.”

As for why it takes two “hits” to TP53 to see an effect on cancer outcomes, the study’s first author Elsa Bernard, a postdoctoral scientist in the Papaemmanouil Lab, speculates that one normal copy is enough to provide adequate protection against DNA damage. This would explain why having only one mutated copy was not associated with genome instability or any worse survival rates than having two normal copies.

Given the frequency of TP53 mutations in cancer, these results make a case for examining the impact of one versus two mutations on other cancers as well. They also reveal the need for clinical trials designed specifically with these molecular differences in mind.

“With the increasing adoption of molecular profiling at the time of cancer diagnosis, we need large, evidence-based studies to inform how to translate these molecular findings into optimal treatment strategies,” Dr. Papaemmanouil says.

Contributing centers: Karolinska Institute (Sweden), Düsseldorf MDS Registry (Germany), University of Pavia (Italy), La Fe University Hospital (Spain), Radboudumc Medical Center Nijmegen (The Netherlands), Amsterdam UMC (The Netherlands), Cochin Hospital (France), Chang Gung Memorial Hospital (Taiwan), Gruppo Romano Laziale MDS (Italy), University of Bologna (Italy), Medical University of Vienna (Austria), Hannover Medical School (Germany), University Hospital Dresden (Germany), Federal University of Ceara (Brazil), Institut Josep Carreras (Spain), Aou Careggi Hospital (Italy), Democritus University of Thrace (Greece), University of Oxford (United Kingdom), Hospital Israelita Albert Einstein (Brazil), Memorial Sloan Kettering Cancer Center (United States), Vanderbilt University (United States), Institute of Hematology and Blood Transfusion (Czech Republic), University Medicine Göttingen (Germany),  Rete Ematologica Lombarda (Italy), Saint-Louis Hospital (France), Saint James’s University Hospital (United Kingdom), Japanese Data Center for Hematopoietic Cell Transplantation (Japan), Nagasaki University (Japan), Tsukuba University (Japan), Gifu Municipal Hospital (Japan), Kobe City Medical Center General Hospital (Japan), Gifu University (Japan), Kyoto University (Japan), Chugoku Central Hospital (Japan), Chulalongkorn University (Thailand), NTT Medical Center Tokyo (Japan), Osaka Red Cross Hospital (Japan), Tokyo Medical University (Japan), Kurashiki Central Hospital (Japan), Sasebo City General Hospital (Japan).

This study was supported in part by the Celgene Corporation, the MDS Foundation, Inc., Bloodwise, Austrian Science Fund, Italian MIUR-PRIN grants, Associazione Italiana per la Ricerca sul Cancro, 5×1000 project, the Francois Wallace Monahan Fellowship, the Josie Robertson Foundation, the European Hematology Association, American Society of Hematology, Gabrielle’s Angels Foundation, V Foundation, Damon Runyon-Rachleff, the Geoffrey Beene Foundation, the Japan Agency for Medical Research and Development, Japan Society for the Promotion of Science, and the Japanese Ministry of Education, Culture, Sports, Science and Technology. Dr. Papaemmanouil is a Josie Robertson-funded investigator at MSK. Drs. Papaemmanouil and Bernard have received research funding from Celgene.